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ERX1164494: Illumina HiSeq 2000 sequencing; qiita_ptid_1038:10141.D.CTRL.soil.T2.4
1 ILLUMINA (Illumina HiSeq 2000) run: 42,171 spots, 4.2M bases, 2.4Mb downloads

Design: Mouse Decomposition experiment on contrasting soil types
Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)
Study: A Universal Microbial Clock for Estimating the Postmortem Interval Metcalf Mouse exp
show Abstracthide Abstract
Establishing the time since death and locating clandestine graves are crucial goals in many forensic investigations, but can often be a challenge because our understanding of human decomposition is very limited. Thus, forensic science currently does not fully leverage decomposition processes as physical evidence. Microbial communities are ubiquitous, crucial for decomposition, and hold great potential as a forensic tool. We show that archaeal, bacterial and microbial eukaryotic communities can be used to estimate the postmortem interval in both a laboratory-based mouse model system as well as in a human model system in the field. Additionally, we demonstrate that bodies decomposing on soil modify the soil microbial community substantially, allowing detection of a decomposing body via the soil microbial community, with forensic implications in scenarios in which bodies are buried or have been moved. Together, these results suggest that microbial communities associated with decomposition hold great promise for forensic science.
Sample: 10141.D.CTRL.soil.T2.4; Metcalf_Mouse_DecompII
SAMEA3628725 • ERS935874 • All experiments • All runs
Organism: soil metagenome
Library:
Name: 10141.D.CTRL.soil.T2.4
Instrument: Illumina HiSeq 2000
Strategy: OTHER
Source: METAGENOMIC
Selection: PCR
Layout: SINGLE
Construction protocol: Illumina HiSeq 18S
Experiment attributes: (show all 15 attributes...) (hide...)
barcode: ATGCTGCAACAC
center_name: UCSDMI
experiment_center: CCME
experiment_title: Metcalf_Mouse_DecompII
linker: CA
pool: 1
primer: TGATCCTTCTGCAGGTTCACCTAC
run_center: CCME
run_date: 2/25/13
run_prefix: MouseDC2_Euk_1_NoIndex_L001_R1_001
samp_size: .1,g
sample_center: CCME
sequencing_meth: sequencing by synthesis
study_center: CCME
target_gene: 18S rRNA
Runs: 1 run, 42,171 spots, 4.2M bases, 2.4Mb
Run# of Spots# of BasesSizePublished
ERR108490442,1714.2M2.4Mb2015-12-19

ID:
2104680

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